The Ensembl Genomes project produces genome browsers for important species from across the taxonomic range, using the Ensembl software system. Five sites are now available: Ensembl Bacteria, Ensembl Fungi, Ensembl Metazoa, Ensembl Plants, and Ensembl Protists.

Ensembl Plants includes reference genome assemblies and gene builds for 15 plant species, including functional, comparative, and variation data for important crop species.